rhdf5filters

DOI: 10.18129/B9.bioc.rhdf5filters  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see rhdf5filters.

HDF5 Compression Filters

Bioconductor version: 3.16

Provides a collection of additional compression filters for HDF5 datasets. The package is intended to provide seemless integration with rhdf5, however the compiled filters can also be used with external applications.

Author: Mike Smith [aut, cre]

Maintainer: Mike Smith <grimbough at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rhdf5filters")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rhdf5filters")

 

HTML	R Script	HDF5 Compression Filters
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataImport, Infrastructure, Software
Version	1.10.1
In Bioconductor since	BioC 3.11 (R-4.0) (3 years)
License	BSD_2_clause + file LICENSE
Depends
Imports
LinkingTo	Rhdf5lib
Suggests	BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0), rhdf5(>= 2.34.0)
SystemRequirements	GNU make
Enhances
URL	https://github.com/grimbough/rhdf5filters
BugReports	https://github.com/grimbough/rhdf5filters
Depends On Me
Imports Me	HDF5Array, rhdf5
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rhdf5filters_1.10.1.tar.gz
Windows Binary	rhdf5filters_1.10.1.zip (64-bit only)
macOS Binary (x86_64)	rhdf5filters_1.10.1.tgz
macOS Binary (arm64)	rhdf5filters_1.10.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rhdf5filters
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rhdf5filters
Bioc Package Browser	https://code.bioconductor.org/browse/rhdf5filters/
Package Short Url	https://bioconductor.org/packages/rhdf5filters/
Package Downloads Report	Download Stats