ncGTW

DOI: 10.18129/B9.bioc.ncGTW  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ncGTW.

Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection

Bioconductor version: 3.16

The purpose of ncGTW is to help XCMS for LC-MS data alignment. Currently, ncGTW can detect the misaligned feature groups by XCMS, and the user can choose to realign these feature groups by ncGTW or not.

Author: Chiung-Ting Wu <ctwu at vt.edu>

Maintainer: Chiung-Ting Wu <ctwu at vt.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ncGTW")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ncGTW")

 

HTML	R Script	ncGTW User Manual
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, MassSpectrometry, Metabolomics, Software
Version	1.12.0
In Bioconductor since	BioC 3.10 (R-3.6) (3.5 years)
License	GPL-2
Depends	methods, BiocParallel, xcms
Imports	Rcpp, grDevices, graphics, stats
LinkingTo	Rcpp
Suggests	BiocStyle, knitr, testthat, rmarkdown
SystemRequirements
Enhances
URL
BugReports	https://github.com/ChiungTingWu/ncGTW/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ncGTW_1.12.0.tar.gz
Windows Binary	ncGTW_1.12.0.zip (64-bit only)
macOS Binary (x86_64)	ncGTW_1.12.0.tgz
macOS Binary (arm64)	ncGTW_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ncGTW
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ncGTW
Bioc Package Browser	https://code.bioconductor.org/browse/ncGTW/
Package Short Url	https://bioconductor.org/packages/ncGTW/
Package Downloads Report	Download Stats