levi

DOI: 10.18129/B9.bioc.levi  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see levi.

Landscape Expression Visualization Interface

Bioconductor version: 3.16

The tool integrates data from biological networks with transcriptomes, displaying a heatmap with surface curves to evidence the altered regions.

Author: Rafael Pilan [aut], Isabelle Silva [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths]

Maintainer: Jose Luiz Rybarczyk Filho <jose.luiz at unesp.br>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("levi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("levi")

 

HTML	R Script	Using levi
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, Network, Sequencing, Software
Version	1.16.0
In Bioconductor since	BioC 3.8 (R-3.5) (4.5 years)
License	GPL (>= 2)
Depends
Imports	DT (>= 0.4), RColorBrewer (>= 1.1-2), colorspace (>= 1.3-2), dplyr (>= 0.7.4), ggplot2 (>= 2.2.1), httr (>= 1.3.1), igraph (>= 1.2.1), reshape2 (>= 1.4.3), shiny (>= 1.0.5), shinydashboard (>= 0.7.0), shinyjs (>= 1.0), xml2 (>= 1.2.0), knitr, Rcpp (>= 0.12.18), grid, grDevices, stats, utils, testthat, methods, rmarkdown
LinkingTo	Rcpp
Suggests	rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	levi_1.16.0.tar.gz
Windows Binary	levi_1.16.0.zip
macOS Binary (x86_64)	levi_1.16.0.tgz
macOS Binary (arm64)	levi_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/levi
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/levi
Bioc Package Browser	https://code.bioconductor.org/browse/levi/
Package Short Url	https://bioconductor.org/packages/levi/
Package Downloads Report	Download Stats