immunoClust

DOI: 10.18129/B9.bioc.immunoClust  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see immunoClust.

immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

Bioconductor version: 3.16

immunoClust is a model based clustering approach for Flow Cytometry samples. The cell-events of single Flow Cytometry samples are modelled by a mixture of multinominal normal- or t-distributions. The cell-event clusters of several samples are modelled by a mixture of multinominal normal-distributions aiming stable co-clusters across these samples.

Author: Till Soerensen [aut, cre]

Maintainer: Till Soerensen <till.soerensen at bioretis.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("immunoClust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("immunoClust")

 

PDF	R Script	immunoClust package
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays, Clustering, FlowCytometry, ImmunoOncology, SingleCell, Software
Version	1.30.0
In Bioconductor since	BioC 3.1 (R-3.2) (8 years)
License	Artistic-2.0
Depends	R (>= 3.6), flowCore
Imports	methods, stats, graphics, grid, lattice, grDevices
LinkingTo
Suggests	BiocStyle, utils, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	immunoClust_1.30.0.tar.gz
Windows Binary	immunoClust_1.30.0.zip
macOS Binary (x86_64)	immunoClust_1.30.0.tgz
macOS Binary (arm64)	immunoClust_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/immunoClust
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/immunoClust
Bioc Package Browser	https://code.bioconductor.org/browse/immunoClust/
Package Short Url	https://bioconductor.org/packages/immunoClust/
Package Downloads Report	Download Stats