This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see iSEEu.
Bioconductor version: 3.16
iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.
Author: Kevin Rue-Albrecht [aut, cre] , Charlotte Soneson [aut] , Federico Marini [aut] , Aaron Lun [aut] , Michael Stadler [ctb]
Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>
Citation (from within R,
enter citation("iSEEu")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("iSEEu")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iSEEu")
HTML | R Script | Panel universe |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, SingleCell, Software, Transcription, Transcriptomics, Visualization |
Version | 1.10.1 |
In Bioconductor since | BioC 3.11 (R-4.0) (3 years) |
License | MIT + file LICENSE |
Depends | iSEE, iSEEhex |
Imports | methods, S4Vectors, IRanges, shiny, SummarizedExperiment, SingleCellExperiment, ggplot2, DT, stats, colourpicker, shinyAce |
LinkingTo | |
Suggests | scRNAseq, scater, scran, airway, edgeR, AnnotationDbi, org.Hs.eg.db, GO.db, KEGGREST, knitr, igraph, rmarkdown, BiocStyle, htmltools, Rtsne, uwot, testthat (>= 2.1.0), covr |
SystemRequirements | |
Enhances | |
URL | https://github.com/iSEE/iSEEu |
BugReports | https://github.com/iSEE/iSEEu/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | iSEEu_1.10.1.tar.gz |
Windows Binary | iSEEu_1.10.1.zip |
macOS Binary (x86_64) | iSEEu_1.10.1.tgz |
macOS Binary (arm64) | iSEEu_1.10.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/iSEEu |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iSEEu |
Bioc Package Browser | https://code.bioconductor.org/browse/iSEEu/ |
Package Short Url | https://bioconductor.org/packages/iSEEu/ |
Package Downloads Report | Download Stats |
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