ggtreeExtra

DOI: 10.18129/B9.bioc.ggtreeExtra  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ggtreeExtra.

An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"

Bioconductor version: 3.16

'ggtreeExtra' extends the method for mapping and visualizing associated data on phylogenetic tree using 'ggtree'. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by 'ggtree' with the grammar of 'ggplot2'.

Author: Shuangbin Xu [aut, cre] , Guangchuang Yu [aut, ctb]

Maintainer: Shuangbin Xu <xshuangbin at 163.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ggtreeExtra")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggtreeExtra")

 

HTML	R Script	ggtreeExtra
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Phylogenetics, Software, Visualization
Version	1.8.1
In Bioconductor since	BioC 3.12 (R-4.0) (2.5 years)
License	GPL (>= 3)
Depends
Imports	ggplot2, utils, rlang, ggnewscale, stats, ggtree, tidytree (>= 0.3.9), cli
LinkingTo
Suggests	treeio, ggstar, patchwork, knitr, rmarkdown, prettydoc, markdown, testthat (>= 3.0.0), pillar
SystemRequirements
Enhances
URL	https://github.com/YuLab-SMU/ggtreeExtra/
BugReports	https://github.com/YuLab-SMU/ggtreeExtra/issues
Depends On Me
Imports Me	MicrobiotaProcess
Suggests Me	enrichplot, ggmsa
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ggtreeExtra_1.8.1.tar.gz
Windows Binary	ggtreeExtra_1.8.1.zip
macOS Binary (x86_64)	ggtreeExtra_1.8.1.tgz
macOS Binary (arm64)	ggtreeExtra_1.8.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ggtreeExtra
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ggtreeExtra
Bioc Package Browser	https://code.bioconductor.org/browse/ggtreeExtra/
Package Short Url	https://bioconductor.org/packages/ggtreeExtra/
Package Downloads Report	Download Stats