genomeIntervals

DOI: 10.18129/B9.bioc.genomeIntervals  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see genomeIntervals.

Operations on genomic intervals

Bioconductor version: 3.16

This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.

Author: Julien Gagneur <gagneur at in.tum.de>, Joern Toedling, Richard Bourgon, Nicolas Delhomme

Maintainer: Julien Gagneur <gagneur at in.tum.de>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("genomeIntervals")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genomeIntervals")

 

PDF	R Script	Overview of the genomeIntervals package.
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Genetics, Infrastructure, Software
Version	1.54.0
In Bioconductor since	BioC 2.4 (R-2.9) (14 years)
License	Artistic-2.0
Depends	R (>= 2.15.0), methods, intervals (>= 0.14.0), BiocGenerics(>= 0.15.2)
Imports	GenomeInfoDb(>= 1.5.8), GenomicRanges(>= 1.21.16), IRanges(>= 2.3.14), S4Vectors(>= 0.7.10)
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	ChIC.data, girafe
Imports Me	ChIC, easyRNASeq
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	genomeIntervals_1.54.0.tar.gz
Windows Binary	genomeIntervals_1.54.0.zip
macOS Binary (x86_64)	genomeIntervals_1.54.0.tgz
macOS Binary (arm64)	genomeIntervals_1.54.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/genomeIntervals
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/genomeIntervals
Bioc Package Browser	https://code.bioconductor.org/browse/genomeIntervals/
Package Short Url	https://bioconductor.org/packages/genomeIntervals/
Package Downloads Report	Download Stats