flowClust

DOI: 10.18129/B9.bioc.flowClust  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see flowClust.

Clustering for Flow Cytometry

Bioconductor version: 3.16

Robust model-based clustering using a t-mixture model with Box-Cox transformation. Note: users should have GSL installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'.

Author: Raphael Gottardo, Kenneth Lo <c.lo at stat.ubc.ca>, Greg Finak <greg at ozette.ai>

Maintainer: Greg Finak <greg at ozette.ai>, Mike Jiang <mike at ozette.ai>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowClust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowClust")

 

HTML	R Script	Robust Model-based Clustering of Flow Cytometry Data\\ The flowClust package
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	Clustering, FlowCytometry, ImmunoOncology, Software, Visualization
Version	3.36.1
In Bioconductor since	BioC 2.2 (R-2.7) (15 years)
License	MIT
Depends	R (>= 2.5.0)
Imports	BiocGenerics, methods, Biobase, graph, flowCore, parallel
LinkingTo
Suggests	testthat, flowWorkspace, flowWorkspaceData, knitr, rmarkdown, openCyto, flowStats(>= 4.7.1)
SystemRequirements	GNU make
Enhances
URL
Depends On Me	flowMerge, flowTrans
Imports Me	CONFESS, cyanoFilter, flowTrans, openCyto
Suggests Me	BiocGenerics, flowTime
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowClust_3.36.1.tar.gz
Windows Binary	flowClust_3.36.1.zip
macOS Binary (x86_64)	flowClust_3.36.1.tgz
macOS Binary (arm64)	flowClust_3.36.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowClust
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowClust
Bioc Package Browser	https://code.bioconductor.org/browse/flowClust/
Package Short Url	https://bioconductor.org/packages/flowClust/
Package Downloads Report	Download Stats