flagme

DOI: 10.18129/B9.bioc.flagme  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see flagme.

Analysis of Metabolomics GC/MS Data

Bioconductor version: 3.16

Fragment-level analysis of gas chromatography-massspectrometry metabolomics data.

Author: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Maintainer: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flagme")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flagme")

 

PDF	R Script	\texttt{flagme}: Fragment-level analysis of \\ GC-MS-based metabolomics data
PDF	R Script	Using flagme -- Fragment-level analysis of GC-MS-based metabolomics data
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, MassSpectrometry, Software
Version	1.54.0
In Bioconductor since	BioC 2.4 (R-2.9) (14 years)
License	LGPL (>= 2)
Depends	gcspikelite, xcms, CAMERA
Imports	gplots, graphics, MASS, methods, SparseM, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flagme_1.54.0.tar.gz
Windows Binary	flagme_1.54.0.zip (64-bit only)
macOS Binary (x86_64)	flagme_1.54.0.tgz
macOS Binary (arm64)	flagme_1.54.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flagme
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flagme
Bioc Package Browser	https://code.bioconductor.org/browse/flagme/
Package Short Url	https://bioconductor.org/packages/flagme/
Package Downloads Report	Download Stats