ecolitk

DOI: 10.18129/B9.bioc.ecolitk  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ecolitk.

Meta-data and tools for E. coli

Bioconductor version: 3.16

Meta-data and tools to work with E. coli. The tools are mostly plotting functions to work with circular genomes. They can used with other genomes/plasmids.

Author: Laurent Gautier

Maintainer: Laurent Gautier <lgautier at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ecolitk")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ecolitk")

 

PDF	R Script	ecolitk
PDF		Reference Manual

Details

biocViews	Annotation, Software, Visualization
Version	1.70.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 18 years)
License	GPL (>= 2)
Depends	R (>= 2.10)
Imports	Biobase, graphics, methods
LinkingTo
Suggests	ecoliLeucine, ecolicdf, graph, multtest, affy
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ecolitk_1.70.0.tar.gz
Windows Binary	ecolitk_1.70.0.zip
macOS Binary (x86_64)	ecolitk_1.70.0.tgz
macOS Binary (arm64)	ecolitk_1.70.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ecolitk
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ecolitk
Bioc Package Browser	https://code.bioconductor.org/browse/ecolitk/
Package Short Url	https://bioconductor.org/packages/ecolitk/
Package Downloads Report	Download Stats