XCIR

DOI: 10.18129/B9.bioc.XCIR  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.16 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see XCIR.

XCI-inference

Bioconductor version: 3.16

Models and tools for subject level analysis of X chromosome inactivation (XCI) and XCI-escape inference.

Author: Renan Sauteraud, Dajiang Liu

Maintainer: Renan Sauteraud <rxs575 at psu.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("XCIR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Coverage, RNASeq, Sequencing, Software, StatisticalMethod
Version	1.12.0
In Bioconductor since	BioC 3.10 (R-3.6) (3.5 years)
License	GPL-2
Depends	methods
Imports	stats, utils, tools, data.table, Biostrings, IRanges, VariantAnnotation, seqminer, ggplot2, biomaRt, readxl, S4Vectors
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/SRenan/XCIR
BugReports	https://github.com/SRenan/XCIR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/XCIR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/XCIR
Package Short Url	https://bioconductor.org/packages/XCIR/
Package Downloads Report	Download Stats