Trendy

DOI: 10.18129/B9.bioc.Trendy  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see Trendy.

Breakpoint analysis of time-course expression data

Bioconductor version: 3.16

Trendy implements segmented (or breakpoint) regression models to estimate breakpoints which represent changes in expression for each feature/gene in high throughput data with ordered conditions.

Author: Rhonda Bacher and Ning Leng

Maintainer: Rhonda Bacher <rbacher at ufl.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Trendy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Trendy")

 

PDF	R Script	Trendy Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	ImmunoOncology, RNASeq, Regression, Software, TimeCourse
Version	1.20.0
In Bioconductor since	BioC 3.7 (R-3.5) (5 years)
License	GPL-3
Depends	R (>= 3.4)
Imports	stats, utils, graphics, grDevices, segmented, gplots, parallel, magrittr, BiocParallel, DT, S4Vectors, SummarizedExperiment, methods, shiny, shinyFiles
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, devtools
SystemRequirements
Enhances
URL	https://github.com/rhondabacher/Trendy
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Trendy_1.20.0.tar.gz
Windows Binary	Trendy_1.20.0.zip
macOS Binary (x86_64)	Trendy_1.20.0.tgz
macOS Binary (arm64)	Trendy_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Trendy
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Trendy
Bioc Package Browser	https://code.bioconductor.org/browse/Trendy/
Package Short Url	https://bioconductor.org/packages/Trendy/
Package Downloads Report	Download Stats