SUITOR

DOI: 10.18129/B9.bioc.SUITOR  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see SUITOR.

Selecting the number of mutational signatures through cross-validation

Bioconductor version: 3.16

An unsupervised cross-validation method to select the optimal number of mutational signatures. A data set of mutational counts is split into training and validation data.Signatures are estimated in the training data and then used to predict the mutations in the validation data.

Author: DongHyuk Lee [aut], Bin Zhu [aut], Bill Wheeler [cre]

Maintainer: Bill Wheeler <wheelerb at imsweb.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SUITOR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SUITOR")

 

PDF	R Script	SUITOR: selecting the number of mutational signatures
PDF		Reference Manual
Text		NEWS

Details

biocViews	Genetics, Software, SomaticMutation
Version	1.0.0
In Bioconductor since	BioC 3.16 (R-4.2) (< 6 months)
License	GPL-2
Depends	R (>= 4.2.0)
Imports	stats, utils, graphics, ggplot2, BiocParallel
LinkingTo
Suggests	devtools, MutationalPatterns, RUnit, BiocManager, BiocGenerics, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
BugReports	https://github.com/wheelerb/SUITOR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SUITOR_1.0.0.tar.gz
Windows Binary	SUITOR_1.0.0.zip
macOS Binary (x86_64)	SUITOR_1.0.0.tgz
macOS Binary (arm64)	SUITOR_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SUITOR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SUITOR
Bioc Package Browser	https://code.bioconductor.org/browse/SUITOR/
Package Short Url	https://bioconductor.org/packages/SUITOR/
Package Downloads Report	Download Stats