ReactomeContentService4R

DOI: 10.18129/B9.bioc.ReactomeContentService4R  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ReactomeContentService4R.

Interface for the Reactome Content Service

Bioconductor version: 3.16

Reactome is a free, open-source, open access, curated and peer-reviewed knowledgebase of bio-molecular pathways. This package is to interact with the Reactome Content Service API. Pre-built functions would allow users to retrieve data and images that consist of proteins, pathways, and other molecules related to a specific gene or entity in Reactome.

Author: Chi-Lam Poon [aut, cre] , Reactome [cph]

Maintainer: Chi-Lam Poon <clpoon807 at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ReactomeContentService4R")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReactomeContentService4R")

 

HTML	R Script	ReactomeContentService4R
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataImport, Pathways, Reactome, Software
Version	1.6.0
In Bioconductor since	BioC 3.13 (R-4.1) (2 years)
License	Apache License (>= 2.0) | file LICENSE
Depends
Imports	httr, jsonlite, utils, magick (>= 2.5.1), data.table, doParallel, foreach, parallel
LinkingTo
Suggests	pdftools, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/reactome/ReactomeContentService4R
BugReports	https://github.com/reactome/ReactomeContentService4R/issues
Depends On Me
Imports Me	ReactomeGraph4R
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ReactomeContentService4R_1.6.0.tar.gz
Windows Binary	ReactomeContentService4R_1.6.0.zip
macOS Binary (x86_64)	ReactomeContentService4R_1.6.0.tgz
macOS Binary (arm64)	ReactomeContentService4R_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ReactomeContentService4R
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ReactomeContentService4R
Bioc Package Browser	https://code.bioconductor.org/browse/ReactomeContentService4R/
Package Short Url	https://bioconductor.org/packages/ReactomeContentService4R/
Package Downloads Report	Download Stats