RUVcorr

DOI: 10.18129/B9.bioc.RUVcorr  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see RUVcorr.

Removal of unwanted variation for gene-gene correlations and related analysis

Bioconductor version: 3.16

RUVcorr allows to apply global removal of unwanted variation (ridged version of RUV) to real and simulated gene expression data.

Author: Saskia Freytag

Maintainer: Saskia Freytag <saskia.freytag at perkins.uwa.edu.au>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RUVcorr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RUVcorr")

 

HTML	R Script	Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, Normalization, Software
Version	1.30.0
In Bioconductor since	BioC 3.1 (R-3.2) (8 years)
License	GPL-2
Depends
Imports	corrplot, MASS, stats, lattice, grDevices, gridExtra, snowfall, psych, BiocParallel, grid, bladderbatch, reshape2, graphics
LinkingTo
Suggests	knitr, hgu133a2.db, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RUVcorr_1.30.0.tar.gz
Windows Binary	RUVcorr_1.30.0.zip (64-bit only)
macOS Binary (x86_64)	RUVcorr_1.30.0.tgz
macOS Binary (arm64)	RUVcorr_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RUVcorr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RUVcorr
Bioc Package Browser	https://code.bioconductor.org/browse/RUVcorr/
Package Short Url	https://bioconductor.org/packages/RUVcorr/
Package Downloads Report	Download Stats