OpenStats

DOI: 10.18129/B9.bioc.OpenStats  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see OpenStats.

A Robust and Scalable Software Package for Reproducible Analysis of High-Throughput genotype-phenotype association

Bioconductor version: 3.16

Package contains several methods for statistical analysis of genotype to phenotype association in high-throughput screening pipelines.

Author: Hamed Haseli Mashhadi

Maintainer: Hamed Haseli Mashhadi <hamedhm at ebi.ac.uk>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OpenStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OpenStats")

 

HTML	R Script	OpenStats
PDF		Reference Manual
Text		NEWS

Details

biocViews	BatchEffect, Bayesian, Software, StatisticalMethod
Version	1.10.0
In Bioconductor since	BioC 3.11 (R-4.0) (3 years)
License	GPL (>= 2)
Depends	nlme
Imports	MASS, jsonlite, Hmisc, methods, knitr, AICcmodavg, car, rlist, summarytools, graphics, stats, utils
LinkingTo
Suggests	rmarkdown
SystemRequirements
Enhances
URL	https://git.io/Jv5w0
BugReports	https://git.io/Jv5wg
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	OpenStats_1.10.0.tar.gz
Windows Binary	OpenStats_1.10.0.zip
macOS Binary (x86_64)	OpenStats_1.10.0.tgz
macOS Binary (arm64)	OpenStats_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/OpenStats
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/OpenStats
Bioc Package Browser	https://code.bioconductor.org/browse/OpenStats/
Package Short Url	https://bioconductor.org/packages/OpenStats/
Package Downloads Report	Download Stats