OTUbase

DOI: 10.18129/B9.bioc.OTUbase  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see OTUbase.

Provides structure and functions for the analysis of OTU data

Bioconductor version: 3.16

Provides a platform for Operational Taxonomic Unit based analysis

Author: Daniel Beck, Matt Settles, and James A. Foster

Maintainer: Daniel Beck <danlbek at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OTUbase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OTUbase")

 

PDF	R Script	An introduction to OTUbase
PDF		Reference Manual

Details

biocViews	DataImport, Sequencing, Software
Version	1.48.0
In Bioconductor since	BioC 2.7 (R-2.12) (12.5 years)
License	Artistic-2.0
Depends	R (>= 2.9.0), methods, S4Vectors, IRanges, ShortRead(>= 1.23.15), Biobase, vegan
Imports	Biostrings
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	OTUbase_1.48.0.tar.gz
Windows Binary	OTUbase_1.48.0.zip
macOS Binary (x86_64)	OTUbase_1.48.0.tgz
macOS Binary (arm64)	OTUbase_1.48.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/OTUbase
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/OTUbase
Bioc Package Browser	https://code.bioconductor.org/browse/OTUbase/
Package Short Url	https://bioconductor.org/packages/OTUbase/
Package Downloads Report	Download Stats