MsBackendMassbank

DOI: 10.18129/B9.bioc.MsBackendMassbank  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see MsBackendMassbank.

Mass Spectrometry Data Backend for MassBank record Files

Bioconductor version: 3.16

Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.

Author: RforMassSpectrometry Package Maintainer [cre], Michael Witting [aut] , Johannes Rainer [aut] , Michael Stravs [ctb]

Maintainer: RforMassSpectrometry Package Maintainer <maintainer at rformassspectrometry.org>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsBackendMassbank")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsBackendMassbank")

 

HTML	R Script	Description and usage of MsBackendMassbank
PDF		Reference Manual

Details

biocViews	DataImport, Infrastructure, MassSpectrometry, Metabolomics, Software
Version	1.6.1
In Bioconductor since	BioC 3.13 (R-4.1) (2 years)
License	Artistic-2.0
Depends	R (>= 4.0), Spectra(>= 1.5.17)
Imports	BiocParallel, S4Vectors, IRanges, methods, ProtGenerics, MsCoreUtils, DBI, utils
LinkingTo
Suggests	testthat, knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), RSQLite, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/RforMassSpectrometry/MsBackendMassbank
BugReports	https://github.com/RforMassSpectrometry/MsBackendMassbank/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MsBackendMassbank_1.6.1.tar.gz
Windows Binary	MsBackendMassbank_1.6.1.zip (64-bit only)
macOS Binary (x86_64)	MsBackendMassbank_1.6.1.tgz
macOS Binary (arm64)	MsBackendMassbank_1.6.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MsBackendMassbank
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MsBackendMassbank
Bioc Package Browser	https://code.bioconductor.org/browse/MsBackendMassbank/
Package Short Url	https://bioconductor.org/packages/MsBackendMassbank/
Package Downloads Report	Download Stats