This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see HTSFilter.
Bioconductor version: 3.16
This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.
Author: Andrea Rau [cre, aut] , Melina Gallopin [ctb], Gilles Celeux [ctb], Florence Jaffrézic [ctb]
Maintainer: Andrea Rau <andrea.rau at inrae.fr>
Citation (from within R,
enter citation("HTSFilter")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("HTSFilter")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HTSFilter")
HTML | R Script | HTSFilter |
Reference Manual | ||
Text | NEWS |
biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, Normalization, Preprocessing, RNASeq, Sequencing, Software |
Version | 1.38.0 |
In Bioconductor since | BioC 2.12 (R-3.0) (10 years) |
License | Artistic-2.0 |
Depends | R (>= 4.0.0) |
Imports | edgeR, DESeq2, BiocParallel, Biobase, utils, stats, grDevices, graphics, methods |
LinkingTo | |
Suggests | EDASeq, testthat, knitr, rmarkdown, BiocStyle |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | coseq |
Suggests Me | HTSCluster |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | HTSFilter_1.38.0.tar.gz |
Windows Binary | HTSFilter_1.38.0.zip |
macOS Binary (x86_64) | HTSFilter_1.38.0.tgz |
macOS Binary (arm64) | HTSFilter_1.38.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/HTSFilter |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HTSFilter |
Bioc Package Browser | https://code.bioconductor.org/browse/HTSFilter/ |
Package Short Url | https://bioconductor.org/packages/HTSFilter/ |
Package Downloads Report | Download Stats |
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