GeneOverlap

DOI: 10.18129/B9.bioc.GeneOverlap  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see GeneOverlap.

Test and visualize gene overlaps

Bioconductor version: 3.16

Test two sets of gene lists and visualize the results.

Author: Li Shen, Icahn School of Medicine at Mount Sinai <shenli.sam at gmail.com>

Maintainer: Ant<c3><b3>nio Miguel de Jesus Domingues, Max-Planck Institute for Cell Biology and Genetics <amjdomingues at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneOverlap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneOverlap")

 

PDF	R Script	Testing and visualizing gene overlaps with the "GeneOverlap" package
PDF		Reference Manual

Details

biocViews	MultipleComparison, Software, Visualization
Version	1.34.0
In Bioconductor since	BioC 2.14 (R-3.1) (9 years)
License	GPL-3
Depends
Imports	stats, RColorBrewer, gplots, methods
LinkingTo
Suggests	RUnit, BiocGenerics, BiocStyle
SystemRequirements
Enhances
URL	http://shenlab-sinai.github.io/shenlab-sinai/
Depends On Me
Imports Me	ATACCoGAPS
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GeneOverlap_1.34.0.tar.gz
Windows Binary	GeneOverlap_1.34.0.zip (64-bit only)
macOS Binary (x86_64)	GeneOverlap_1.34.0.tgz
macOS Binary (arm64)	GeneOverlap_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GeneOverlap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GeneOverlap
Bioc Package Browser	https://code.bioconductor.org/browse/GeneOverlap/
Package Short Url	https://bioconductor.org/packages/GeneOverlap/
Package Downloads Report	Download Stats