ExperimentSubset

DOI: 10.18129/B9.bioc.ExperimentSubset  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ExperimentSubset.

Manages subsets of data with Bioconductor Experiment objects

Bioconductor version: 3.16

Experiment objects such as the SummarizedExperiment or SingleCellExperiment are data containers for one or more matrix-like assays along with the associated row and column data. Often only a subset of the original data is needed for down-stream analysis. For example, filtering out poor quality samples will require excluding some columns before analysis. The ExperimentSubset object is a container to efficiently manage different subsets of the same data without having to make separate objects for each new subset.

Author: Irzam Sarfraz [aut, cre] , Muhammad Asif [aut, ths] , Joshua D. Campbell [aut]

Maintainer: Irzam Sarfraz <irzam9095 at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ExperimentSubset")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExperimentSubset")

 

HTML	R Script	An introduction to ExperimentSubset class
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataImport, DataRepresentation, Infrastructure, Software
Version	1.8.0
In Bioconductor since	BioC 3.12 (R-4.0) (2.5 years)
License	MIT + file LICENSE
Depends	R (>= 4.0.0), SummarizedExperiment, SingleCellExperiment, SpatialExperiment, TreeSummarizedExperiment
Imports	methods, Matrix, S4Vectors
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat, covr, stats, scran, scater, scds, TENxPBMCData, airway
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ExperimentSubset_1.8.0.tar.gz
Windows Binary	ExperimentSubset_1.8.0.zip
macOS Binary (x86_64)	ExperimentSubset_1.8.0.tgz
macOS Binary (arm64)	ExperimentSubset_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ExperimentSubset
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ExperimentSubset
Bioc Package Browser	https://code.bioconductor.org/browse/ExperimentSubset/
Package Short Url	https://bioconductor.org/packages/ExperimentSubset/
Package Downloads Report	Download Stats