DiffLogo

DOI: 10.18129/B9.bioc.DiffLogo  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see DiffLogo.

DiffLogo: A comparative visualisation of biooligomer motifs

Bioconductor version: 3.16

DiffLogo is an easy-to-use tool to visualize motif differences.

Author: c( person("Martin", "Nettling", role = c("aut", "cre"), email = "martin.nettling@informatik.uni-halle.de"), person("Hendrik", "Treutler", role = c("aut", "cre"), email = "hendrik.treutler@ipb-halle.de"), person("Jan", "Grau", role = c("aut", "ctb"), email = "grau@informatik.uni-halle.de"), person("Andrey", "Lando", role = c("aut", "ctb"), email = "dronte@autosome.ru"), person("Jens", "Keilwagen", role = c("aut", "ctb"), email = "jens.keilwagen@julius-kuehn.de"), person("Stefan", "Posch", role = "aut", email = "posch@informatik.uni-halle.de"), person("Ivo", "Grosse", role = "aut", email = "grosse@informatik.uni-halle.de"))

Maintainer: Hendrik Treutler<hendrik.treutler at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DiffLogo")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DiffLogo")

 

PDF	R Script	Basics of the DiffLogo package
PDF		Reference Manual

Details

biocViews	Alignment, MotifAnnotation, MultipleComparison, SequenceMatching, Software, Visualization
Version	2.22.0
In Bioconductor since	BioC 3.2 (R-3.2) (7.5 years)
License	GPL (>= 2)
Depends	R (>= 3.4), stats, cba
Imports	grDevices, graphics, utils, tools
LinkingTo
Suggests	knitr, testthat, seqLogo, MotifDb
SystemRequirements
Enhances
URL	https://github.com/mgledi/DiffLogo/
BugReports	https://github.com/mgledi/DiffLogo/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DiffLogo_2.22.0.tar.gz
Windows Binary	DiffLogo_2.22.0.zip
macOS Binary (x86_64)	DiffLogo_2.22.0.tgz
macOS Binary (arm64)	DiffLogo_2.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DiffLogo
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DiffLogo
Bioc Package Browser	https://code.bioconductor.org/browse/DiffLogo/
Package Short Url	https://bioconductor.org/packages/DiffLogo/
Package Downloads Report	Download Stats