ChIPsim

DOI: 10.18129/B9.bioc.ChIPsim  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ChIPsim.

Simulation of ChIP-seq experiments

Bioconductor version: 3.16

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Author: Peter Humburg

Maintainer: Peter Humburg <Peter.Humburg at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChIPsim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPsim")

 

PDF	R Script	Simulating ChIP-seq experiments
PDF		Reference Manual

Details

biocViews	ChIPSeq, Infrastructure, Software
Version	1.52.0
In Bioconductor since	BioC 2.5 (R-2.10) (13.5 years)
License	GPL (>= 2)
Depends	Biostrings(>= 2.29.2)
Imports	IRanges, XVector, Biostrings, ShortRead, graphics, methods, stats, utils
LinkingTo
Suggests	actuar, zoo
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ChIPsim_1.52.0.tar.gz
Windows Binary	ChIPsim_1.52.0.zip
macOS Binary (x86_64)	ChIPsim_1.52.0.tgz
macOS Binary (arm64)	ChIPsim_1.52.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ChIPsim
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ChIPsim
Bioc Package Browser	https://code.bioconductor.org/browse/ChIPsim/
Package Short Url	https://bioconductor.org/packages/ChIPsim/
Package Downloads Report	Download Stats