CNORode

DOI: 10.18129/B9.bioc.CNORode  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see CNORode.

ODE add-on to CellNOptR

Bioconductor version: 3.16

Logic based ordinary differential equation (ODE) add-on to CellNOptR.

Author: David Henriques, Thomas Cokelaer, Attila Gabor, Federica Eduati, Enio Gjerga

Maintainer: Attila Gabor <attila.gabor at uni-heidelberg.de>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNORode")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORode")

 

PDF	R Script	Training Signalling Pathway Maps to Biochemical Data with Logic-Based Ordinary Differential Equations
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, CellBasedAssays, CellBiology, ImmunoOncology, Proteomics, Software, TimeCourse
Version	1.40.0
In Bioconductor since	BioC 2.11 (R-2.15) (10.5 years)
License	GPL-2
Depends	CellNOptR, genalg, knitr
Imports
LinkingTo
Suggests
SystemRequirements
Enhances	MEIGOR, doParallel, foreach
URL
Depends On Me	MEIGOR
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CNORode_1.40.0.tar.gz
Windows Binary	CNORode_1.40.0.zip (64-bit only)
macOS Binary (x86_64)	CNORode_1.40.0.tgz
macOS Binary (arm64)	CNORode_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CNORode
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CNORode
Bioc Package Browser	https://code.bioconductor.org/browse/CNORode/
Package Short Url	https://bioconductor.org/packages/CNORode/
Package Downloads Report	Download Stats