BaseSpaceR

DOI: 10.18129/B9.bioc.BaseSpaceR  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see BaseSpaceR.

R SDK for BaseSpace RESTful API

Bioconductor version: 3.16

A rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.

Author: Adrian Alexa

Maintainer: Jared O'Connell <joconnell at illumina.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BaseSpaceR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BaseSpaceR")

 

PDF	R Script	BaseSpaceR
PDF		Reference Manual
Text		NEWS

Details

biocViews	ConnectTools, DataImport, DataRepresentation, Genetics, HighThroughputSequencing, Infrastructure, Sequencing, Software
Version	1.42.0
In Bioconductor since	BioC 2.12 (R-3.0) (10 years)
License	Apache License 2.0
Depends	R (>= 2.15.0), RCurl, RJSONIO
Imports	methods
LinkingTo
Suggests	RUnit, IRanges, Rsamtools
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BaseSpaceR_1.42.0.tar.gz
Windows Binary	BaseSpaceR_1.42.0.zip
macOS Binary (x86_64)	BaseSpaceR_1.42.0.tgz
macOS Binary (arm64)	BaseSpaceR_1.42.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BaseSpaceR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BaseSpaceR
Bioc Package Browser	https://code.bioconductor.org/browse/BaseSpaceR/
Package Short Url	https://bioconductor.org/packages/BaseSpaceR/
Package Downloads Report	Download Stats