ASpli

DOI: 10.18129/B9.bioc.ASpli  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ASpli.

Analysis of Alternative Splicing Using RNA-Seq

Bioconductor version: 3.16

Integrative pipeline for the analysis of alternative splicing using RNAseq.

Author: Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky and Ariel Chernomoretz

Maintainer: Estefania Mancini <emancini at leloir.org.ar>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ASpli")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASpli")

 

PDF	R Script	ASpli
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, GenomeAnnotation, ImmunoOncology, RNASeq, Sequencing, Software, TimeCourse, Transcription
Version	2.8.0
In Bioconductor since	BioC 3.4 (R-3.3) (6.5 years)
License	GPL
Depends	methods, grDevices, stats, utils, parallel, edgeR, limma, AnnotationDbi
Imports	GenomicRanges, GenomicFeatures, BiocGenerics, IRanges, GenomicAlignments, Gviz, S4Vectors, Rsamtools, BiocStyle, igraph, htmltools, data.table, UpSetR, tidyr, DT, MASS, grid, graphics, pbmcapply
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ASpli_2.8.0.tar.gz
Windows Binary	ASpli_2.8.0.zip
macOS Binary (x86_64)	ASpli_2.8.0.tgz
macOS Binary (arm64)	ASpli_2.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ASpli
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ASpli
Bioc Package Browser	https://code.bioconductor.org/browse/ASpli/
Package Short Url	https://bioconductor.org/packages/ASpli/
Package Downloads Report	Download Stats