This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.15 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see proteomics.
Bioconductor version: Release (3.15)
This workflow illustrates R / Bioconductor infrastructure for proteomics. Topics covered focus on support for open community-driven formats for raw data and identification results, packages for peptide-spectrum matching, data processing and analysis.
Author: Laurent Gatto [aut, cre]
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
Citation (from within R,
enter citation("proteomics")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("proteomics")
For older versions of R, please refer to the appropriate Bioconductor release.
biocViews | ImmunoOncologyWorkflow, ProteomicsWorkflow, Workflow |
Version | 1.20.0 |
License | Artistic-2.0 |
Depends | R (>= 3.3.0), mzR, mzID, MSnID, MSnbase, rpx, MLInterfaces, pRoloc, pRolocdata, rols, hpar |
Imports | |
LinkingTo | |
Suggests | knitr, rmarkdown, BiocStyle |
SystemRequirements | |
Enhances | |
URL | https://www.bioconductor.org/help/workflows/proteomics/ |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS Binary (x86_64) | |
Source Repository | git clone https://git.bioconductor.org/packages/proteomics |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/proteomics |
Package Short Url | https://bioconductor.org/packages/proteomics/ |
Package Downloads Report | Download Stats |
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