signatureSearchData

DOI: 10.18129/B9.bioc.signatureSearchData    

Datasets for signatureSearch package

Bioconductor version: Release (3.15)

CMAP/LINCS hdf5 databases and other annotations used for signatureSearch software package.

Author: Yuzhu Duan <yduan004 at ucr.edu>, Brendan Gongol <bgong001 at ucr.edu>, Thomas Girke <thomas.girke at ucr.edu>

Maintainer: Brendan Gongol <bgong001 at ucr.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("signatureSearchData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("signatureSearchData")

 

HTML	R Script	signatureSearchData
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData
Version	1.10.0
License	Artistic-2.0
Depends	R (>= 3.6)
Imports	ExperimentHub, utils, affy, limma, Biobase, magrittr, dplyr, R.utils, stats, rhdf5
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	signatureSearch
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	signatureSearchData_1.10.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/signatureSearchData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/signatureSearchData
Package Short Url	https://bioconductor.org/packages/signatureSearchData/
Package Downloads Report	Download Stats