ppiData

DOI: 10.18129/B9.bioc.ppiData    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.15 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ppiData.

A package that contains the bait to prey directed graphs for protein-protein interactions

Bioconductor version: Release (3.15)

This package contains the directed graphs for protein interaction data as derived from Y2H and APMS. It also includes the code used to obtain the y2h data from IntAct Repository.

Author: Tony Chiang

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ppiData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ppiData")

 

HTML	R Script	ppiData: Quick Start
PDF		Reference Manual

Details

biocViews	ExperimentData
Version	0.34.0
License	Artistic-2.0
Depends	graph
Imports	AnnotationDbi
LinkingTo
Suggests	org.Sc.sgd.db, ppiStats, rmarkdown, knitr, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	ppiStats, ScISI
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ppiData_0.34.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/ppiData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ppiData
Package Short Url	https://bioconductor.org/packages/ppiData/
Package Downloads Report	Download Stats