mosaicsExample

DOI: 10.18129/B9.bioc.mosaicsExample    

Example data for the mosaics package, which implements MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data for transcription factor binding and histone modification

Bioconductor version: Release (3.15)

Data for the mosaics package, consisting of (1) chromosome 22 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding and H3K4me3 modification in MCF7 cell line from ENCODE database (HG19) and (2) chromosome 21 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding, with mappability, GC content, and sequence ambiguity scores of human genome HG18.

Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles

Maintainer: Dongjun Chung <dongjun.chung at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mosaicsExample")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	ChIPseqData, ExperimentData, Homo_sapiens
Version	1.34.0
License	GPL (>= 2)
Depends	R (>= 2.11.1)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://groups.google.com/group/mosaics_user_group
Depends On Me
Imports Me
Suggests Me	mosaics
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mosaicsExample_1.34.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/mosaicsExample
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mosaicsExample
Package Short Url	https://bioconductor.org/packages/mosaicsExample/
Package Downloads Report	Download Stats