healthyControlsPresenceChecker

DOI: 10.18129/B9.bioc.healthyControlsPresenceChecker    

Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not

Bioconductor version: Release (3.15)

A function that reads in the GEO accession code of a gene expression dataset, retrieves its data from GEO, and checks if data of healthy controls are present in the dataset. It returns true if healthy controls data are found, and false otherwise. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL .

Author: Davide Chicco [aut, cre]

Maintainer: Davide Chicco <davide.chicco at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("healthyControlsPresenceChecker")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("healthyControlsPresenceChecker")

 

HTML	R Script	healthyControlsPresenceChecker vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExpressionData, GEO, RepositoryData
Version	1.0.0
License	GPL-3
Depends	R (>= 4.0.0)
Imports	xml2, GEOquery, geneExpressionFromGEO, magrittr
LinkingTo
Suggests	RUnit, BiocGenerics, markdown, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/davidechicco/healthyControlsPresenceChecker
BugReports	https://github.com/davidechicco/healthyControlsPresenceChecker/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	healthyControlsPresenceChecker_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/healthyControlsPresenceChecker
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/healthyControlsPresenceChecker
Package Short Url	https://bioconductor.org/packages/healthyControlsPresenceChecker/
Package Downloads Report	Download Stats