Bioconductor version: Release (3.15)
This package includes the data necessary to run functions and examples in epimutacions package. Collection of DNA methylation data. The package contains 2 datasets: (1) Control ( GEO: GSE104812), (GEO: GSE97362) case samples; and (2) reference panel (GEO: GSE127824). It also contains candidate regions to be epimutations in 450k methylation arrays.
Author: Leire Abarrategui [aut, cre], Juan R. Gonzalez [aut], Carlos Ruiz-Arenas [aut], Carles Hernandez-Ferrer [aut]
Maintainer: Leire Abarrategui <abarrategui.leire at gmail.com>
Citation (from within R,
enter citation("epimutacionsData")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("epimutacionsData")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epimutacionsData")
HTML | R Script | data repository for epimutacions package |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylationArrayData, MicroarrayData |
Version | 1.0.0 |
License | MIT + file LICENSE |
Depends | R (>= 4.2.0) |
Imports | |
LinkingTo | |
Suggests | rmarkdown, BiocStyle, knitr, ExperimentHub, minfi |
SystemRequirements | |
Enhances | |
URL | https://github.com/LeireAbarrategui/epimutacionsData |
BugReports | https://github.com/LeireAbarrategui/epimutacionsData/issues |
Depends On Me | epimutacions |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | epimutacionsData_1.0.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
Source Repository | git clone https://git.bioconductor.org/packages/epimutacionsData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/epimutacionsData |
Package Short Url | https://bioconductor.org/packages/epimutacionsData/ |
Package Downloads Report | Download Stats |
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