Bioconductor version: Release (3.15)
The curatedTBData is an R package that provides standardized, curated tuberculosis(TB) transcriptomic studies. The initial release of the package contains 49 studies. The curatedTBData package allows users to access tuberculosis trancriptomic efficiently and to make efficient comparison for different TB gene signatures across multiple datasets.
Author: Xutao Wang [aut, cre], W. Evan Johnson [aut], Prasad Patil [aut]
Maintainer: Xutao Wang <xutaow at bu.edu>
Citation (from within R,
enter citation("curatedTBData")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("curatedTBData")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("curatedTBData")
HTML | R Script | curatedTBData |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | ExperimentData, ExperimentHub, GEO, Homo_sapiens_Data |
Version | 1.2.0 |
License | MIT + file LICENSE |
Depends | R (>= 4.1.0) |
Imports | AnnotationHub, ExperimentHub, MultiAssayExperiment, rlang, stats |
LinkingTo | |
Suggests | BiocStyle, DT, dplyr, HGNChelper, knitr, methods, rmarkdown, SummarizedExperiment, sva, testthat |
SystemRequirements | |
Enhances | |
URL | https://github.com/compbiomed/curatedTBData |
BugReports | https://github.com/compbiomed/curatedTBData/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | curatedTBData_1.2.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
Source Repository | git clone https://git.bioconductor.org/packages/curatedTBData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/curatedTBData |
Package Short Url | https://bioconductor.org/packages/curatedTBData/ |
Package Downloads Report | Download Stats |
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