Bioconductor version: Release (3.15)
This is an external ExperimentData package for LRcell. This data package contains the gene enrichment scores calculated from scRNA-seq dataset which indicates the gene enrichment of each cell type in certain brain region. LRcell package is used to identify specific sub-cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment. For more details, please visit: https://github.com/marvinquiet/LRcell.
Maintainer: Wenjing Ma <wenjing.ma at emory.edu>
Citation (from within R,
enter citation("LRcellTypeMarkers")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("LRcellTypeMarkers")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("LRcellTypeMarkers")
HTML | R Script | LRcellTypeMarkers: Marker gene information for LRcell R Bioconductor package using Bioconductor's ExperimentHub |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | ExperimentData, ExperimentHub, ExpressionData, PackageTypeData, RNASeqData, SingleCellData |
Version | 1.4.0 |
License | MIT + file LICENSE |
Depends | R (>= 4.1) |
Imports | ExperimentHub |
LinkingTo | |
Suggests | LRcell, BiocStyle, knitr, rmarkdown, roxygen2, testthat |
SystemRequirements | |
Enhances | |
URL | |
BugReports | https://github.com/marvinquiet/LRcellTypeMarkers/issues |
Depends On Me | |
Imports Me | |
Suggests Me | LRcell |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | LRcellTypeMarkers_1.4.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
Source Repository | git clone https://git.bioconductor.org/packages/LRcellTypeMarkers |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/LRcellTypeMarkers |
Package Short Url | https://bioconductor.org/packages/LRcellTypeMarkers/ |
Package Downloads Report | Download Stats |
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