HarmanData

DOI: 10.18129/B9.bioc.HarmanData    

Data for the Harman package

Bioconductor version: Release (3.15)

Datasets of accompany Harman, a PCA and constrained optimisation based technique. Contains three example datasets: IMR90, Human lung fibroblast cells exposed to nitric oxide; NPM, an experiment to test skin penetration of metal oxide nanoparticles following topical application of sunscreens in non-pregnant mice; OLF; an experiment to gauge the response of human olfactory neurosphere-derived (hONS) cells to ZnO nanoparticles. Since version 1.24, this package also contains the Infinium5 dataset, a set of batch correction adjustments across 5 Illumina Infinium Methylation BeadChip datasets. This file does not contain methylation data, but summary statistics of 5 datasets after correction. There is also an EpiSCOPE_sample file as exampling for the new methylation clustering functionality in Harman.

Author: Yalchin Oytam [aut], Josh Bowden [aut], Jason Ross [aut, cre]

Maintainer: Jason Ross <jason.ross at csiro.au>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HarmanData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HarmanData")

 

HTML	R Script	HarmanData
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExpressionData, Homo_sapiens_Data, MicroarrayData, Mus_musculus_Data
Version	1.24.0
License	GPL-3
Depends	R (>= 3.5.0)
Imports
LinkingTo
Suggests	BiocGenerics, BiocStyle, knitr, rmarkdown, Harman(>= 1.23.3)
SystemRequirements
Enhances
URL	http://www.bioinformatics.csiro.au/harman/
Depends On Me
Imports Me
Suggests Me	Harman
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HarmanData_1.24.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/HarmanData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HarmanData
Package Short Url	https://bioconductor.org/packages/HarmanData/
Package Downloads Report	Download Stats