CardinalWorkflows

DOI: 10.18129/B9.bioc.CardinalWorkflows    

Datasets and workflows for the Cardinal mass spectrometry imaging package

Bioconductor version: Release (3.15)

Datasets and workflows for Cardinal: DESI and MALDI examples including pig fetus, cardinal painting, and human RCC.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CardinalWorkflows")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CardinalWorkflows")

 

HTML	R Script	1. Segmentation: Unsupervised analysis workflow
HTML	R Script	2. Classification: Supervised analysis workflow
HTML	R Script	3. Class comparision: Statistical testing workflow
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ImagingMassSpectrometryData, MassSpectrometryData
Version	1.28.0
License	Artistic-2.0
Depends	R (>= 2.10), Cardinal
Imports
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CardinalWorkflows_1.28.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/CardinalWorkflows
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CardinalWorkflows
Package Short Url	https://bioconductor.org/packages/CardinalWorkflows/
Package Downloads Report	Download Stats