XtraSNPlocs.Hsapiens.dbSNP141.GRCh38

DOI: 10.18129/B9.bioc.XtraSNPlocs.Hsapiens.dbSNP141.GRCh38    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Extra SNP locations for Homo sapiens (dbSNP Build 141)

Bioconductor version: Release (3.15)

Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 141. The source data files used for this package were created by NCBI on May 1st, 2014, and contain SNPs mapped to reference genome GRCh38. While the SNPlocs.Hsapiens.dbSNP141.GRCh38 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).

Author: Hervé Pagès

Maintainer: H. Pagès <hpages.on.github at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("XtraSNPlocs.Hsapiens.dbSNP141.GRCh38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, Genetics, Homo_sapiens, XtraSNPlocs
Version	0.99.13
License	Artistic-2.0
Depends	R (>= 2.10), S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome(>= 1.35.5)
Imports	methods, utils, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
LinkingTo
Suggests	SNPlocs.Hsapiens.dbSNP141.GRCh38, BSgenome.Hsapiens.NCBI.GRCh38(>= 1.3.19)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	XtraSNPlocs.Hsapiens.dbSNP141.GRCh38_0.99.13.tar.gz
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Package Short Url	https://bioconductor.org/packages/XtraSNPlocs.Hsapiens.dbSNP141.GRCh38/
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