Bioconductor version: Release (3.15)
Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p13) and stored in Biostrings objects.
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("BSgenome.Hsapiens.UCSC.hg38")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("BSgenome.Hsapiens.UCSC.hg38")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | AnnotationData, BSgenome, Genetics, Homo_sapiens |
Version | 1.4.4 |
License | Artistic-2.0 |
Depends | R (>= 3.5.0), BSgenome(>= 1.60.0) |
Imports | BSgenome |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | BSgenome.Hsapiens.UCSC.hg38.masked |
Imports Me | branchpointer, BSgenome.Hsapiens.UCSC.hg38.masked, musicatk, ORFhunteR, primirTSS, trena, uncoverappLib |
Suggests Me | BSgenome, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor, bsseq, BUSpaRse, ChIPpeakAnno, circRNAprofiler, CNEr, crisprBowtie, crisprBwa, eisaR, enhancerHomologSearch, EpiTxDb, GenVisR, GRaNIE, HiCDCPlus, MethReg, Motif2Site, multicrispr, periodicDNA, pqsfinder, REMP, scanMiRApp, SCOPE, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP151.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh38, supersigs, TAPseq, Ularcirc, XNAString, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38 |
Links To Me |
Follow Installation instructions to use this package in your R session.
Source Package | BSgenome.Hsapiens.UCSC.hg38_1.4.4.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
Package Short Url | https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38/ |
Package Downloads Report | Download Stats |
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