Bioconductor version: Release (3.15)
This package implements a suite of methods to preprocess data from PTR-TOF-MS instruments (HDF5 format) and generates the 'sample by features' table of peak intensities in addition to the sample and feature metadata (as a singl Author: camille Roquencourt [aut, cre] Maintainer: camille Roquencourt <camille.roquencourt at hotmail.fr> Citation (from within R,
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Installation instructions to use this
package in your R session.citation("ptairMS")
):Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ptairMS")
Documentation
browseVignettes("ptairMS")
HTML
R Script
ptaiMS: Processing and analysis of PTR-TOF-MS data
PDF
Reference Manual
Text
NEWS
Details
biocViews
Alignment, MassSpectrometry, Metabolomics, PeakDetection, Preprocessing, Software
Version
1.4.1
In Bioconductor since
BioC 3.13 (R-4.1) (1.5 years)
License
GPL-3
Depends
Imports
Biobase, bit64, chron, data.table, doParallel, DT, enviPat, foreach, ggplot2, graphics, grDevices, ggpubr, gridExtra, Hmisc, methods, minpack.lm, MSnbase, parallel, plotly, rhdf5, rlang, Rcpp, shiny, shinyscreenshot, signal, scales, stats, utils
LinkingTo
Rcpp
Suggests
knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0), ptairData, ropls
SystemRequirements
Enhances
URL
BugReports
https://github.com/camilleroquencourt/ptairMS/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report
Package Archives
Source Package
ptairMS_1.4.1.tar.gz
Windows Binary
ptairMS_1.4.1.zip
macOS Binary (x86_64)
ptairMS_1.4.1.tgz
Source Repository
git clone https://git.bioconductor.org/packages/ptairMS
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/ptairMS
Package Short Url
https://bioconductor.org/packages/ptairMS/
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