ptairMS

DOI: 10.18129/B9.bioc.ptairMS    

Pre-processing PTR-TOF-MS Data

Bioconductor version: Release (3.15)

This package implements a suite of methods to preprocess data from PTR-TOF-MS instruments (HDF5 format) and generates the 'sample by features' table of peak intensities in addition to the sample and feature metadata (as a singl

Author: camille Roquencourt [aut, cre]

Maintainer: camille Roquencourt <camille.roquencourt at hotmail.fr>

Citation (from within R, enter citation("ptairMS")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ptairMS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ptairMS")

 

HTML R Script ptaiMS: Processing and analysis of PTR-TOF-MS data
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, MassSpectrometry, Metabolomics, PeakDetection, Preprocessing, Software
Version 1.4.1
In Bioconductor since BioC 3.13 (R-4.1) (1.5 years)
License GPL-3
Depends
Imports Biobase, bit64, chron, data.table, doParallel, DT, enviPat, foreach, ggplot2, graphics, grDevices, ggpubr, gridExtra, Hmisc, methods, minpack.lm, MSnbase, parallel, plotly, rhdf5, rlang, Rcpp, shiny, shinyscreenshot, signal, scales, stats, utils
LinkingTo Rcpp
Suggests knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0), ptairData, ropls
SystemRequirements
Enhances
URL
BugReports https://github.com/camilleroquencourt/ptairMS/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ptairMS_1.4.1.tar.gz
Windows Binary ptairMS_1.4.1.zip
macOS Binary (x86_64) ptairMS_1.4.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/ptairMS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ptairMS
Package Short Url https://bioconductor.org/packages/ptairMS/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.15 Source Archive

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