hmdbQuery

DOI: 10.18129/B9.bioc.hmdbQuery    

utilities for exploration of human metabolome database

Bioconductor version: Release (3.15)

Define utilities for exploration of human metabolome database, including functions to retrieve specific metabolite entries and data snapshots with pairwise associations (metabolite-gene,-protein,-disease).

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hmdbQuery")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hmdbQuery")

 

HTML	R Script	hmdbQuery: working with Human Metabolome Database (hmdb.ca)
PDF		Reference Manual

Details

biocViews	Infrastructure, Metabolomics, Software
Version	1.16.0
In Bioconductor since	BioC 3.7 (R-3.5) (4.5 years)
License	Artistic-2.0
Depends	R (>= 3.5), XML
Imports	S4Vectors, methods, utils
LinkingTo
Suggests	knitr, annotate, gwascat, testthat, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	hmdbQuery_1.16.0.tar.gz
Windows Binary	hmdbQuery_1.16.0.zip (64-bit only)
macOS Binary (x86_64)	hmdbQuery_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/hmdbQuery
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/hmdbQuery
Package Short Url	https://bioconductor.org/packages/hmdbQuery/
Package Downloads Report	Download Stats