heatmaps

DOI: 10.18129/B9.bioc.heatmaps    

Flexible Heatmaps for Functional Genomics and Sequence Features

Bioconductor version: Release (3.15)

This package provides functions for plotting heatmaps of genome-wide data across genomic intervals, such as ChIP-seq signals at peaks or across promoters. Many functions are also provided for investigating sequence features.

Author: Malcolm Perry <mgperry32 at gmail.com>

Maintainer: Malcolm Perry <mgperry32 at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("heatmaps")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("heatmaps")

 

HTML	R Script	Vignette Title
PDF		Reference Manual
Text		NEWS

Details

biocViews	FunctionalGenomics, SequenceMatching, Software, Visualization
Version	1.20.0
In Bioconductor since	BioC 3.5 (R-3.4) (5.5 years)
License	Artistic-2.0
Depends	R (>= 3.5.0)
Imports	methods, grDevices, graphics, stats, Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix, Matrix, EBImage, RColorBrewer, BiocGenerics, GenomeInfoDb
LinkingTo
Suggests	BSgenome.Drerio.UCSC.danRer7, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	heatmaps_1.20.0.tar.gz
Windows Binary	heatmaps_1.20.0.zip (64-bit only)
macOS Binary (x86_64)	heatmaps_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/heatmaps
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/heatmaps
Package Short Url	https://bioconductor.org/packages/heatmaps/
Package Downloads Report	Download Stats