dagLogo

DOI: 10.18129/B9.bioc.dagLogo    

dagLogo: a Bioconductor package for visualizing conserved amino acid sequence pattern in groups based on probability theory

Bioconductor version: Release (3.15)

Visualize significant conserved amino acid sequence pattern in groups based on probability theory.

Author: Jianhong Ou, Haibo Liu, Alexey Stukalov, Niraj Nirala, Usha Acharya, Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at duke.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("dagLogo")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dagLogo")

 

HTML	R Script	dagLogo Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	SequenceMatching, Software, Visualization
Version	1.34.0
In Bioconductor since	BioC 2.13 (R-3.0) (9 years)
License	GPL (>=2)
Depends	R (>= 3.0.1), methods, grid
Imports	pheatmap, Biostrings, UniProt.ws, BiocGenerics, utils, biomaRt, motifStack
LinkingTo
Suggests	XML, grImport, grImport2, BiocStyle, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	dagLogo_1.34.0.tar.gz
Windows Binary	dagLogo_1.34.0.zip (64-bit only)
macOS Binary (x86_64)	dagLogo_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/dagLogo
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/dagLogo
Package Short Url	https://bioconductor.org/packages/dagLogo/
Package Downloads Report	Download Stats