Bioconductor version: Release (3.15)
The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.
Author: Martin Morgan [aut, cre] , Kayla Interdonato [aut], Daniel Parker [aut, cph] (jsoncons C++ library creator)
Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>
Citation (from within R,
enter citation("cellxgenedp")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("cellxgenedp")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cellxgenedp")
HTML | R Script | Discover and download datasets and files from the cellxgene data portal |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | DataImport, SingleCell, Software, ThirdPartyClient |
Version | 1.0.1 |
In Bioconductor since | BioC 3.15 (R-4.2) (0.5 years) |
License | Artistic-2.0 | BSL-1.0 | file LICENSE |
Depends | |
Imports | dplyr, httr, curl, jsonlite, utils, tools, parallel, shiny, DT |
LinkingTo | cpp11 |
Suggests | zellkonverter, SingleCellExperiment, HDF5Array, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), mockery |
SystemRequirements | C++14 |
Enhances | |
URL | |
Depends On Me | |
Imports Me | UniProt.ws |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | cellxgenedp_1.0.1.tar.gz |
Windows Binary | cellxgenedp_1.0.1.zip (64-bit only) |
macOS Binary (x86_64) | cellxgenedp_1.0.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/cellxgenedp |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cellxgenedp |
Package Short Url | https://bioconductor.org/packages/cellxgenedp/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.15 | Source Archive |
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