Wrench

DOI: 10.18129/B9.bioc.Wrench    

Wrench normalization for sparse count data

Bioconductor version: Release (3.15)

Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.

Author: Senthil Kumar Muthiah [aut], Hector Corrada Bravo [aut, cre]

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Wrench")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Wrench")

 

HTML	R Script	Wrench
PDF		Reference Manual

Details

biocViews	Normalization, Sequencing, Software
Version	1.14.0
In Bioconductor since	BioC 3.8 (R-3.5) (4 years)
License	Artistic-2.0
Depends	R (>= 3.5.0)
Imports	limma, matrixStats, locfit, stats, graphics
LinkingTo
Suggests	knitr, rmarkdown, metagenomeSeq, DESeq2, edgeR
SystemRequirements
Enhances
URL	https://github.com/HCBravoLab/Wrench
BugReports	https://github.com/HCBravoLab/Wrench/issues
Depends On Me
Imports Me	metagenomeSeq
Suggests Me	PLNmodels
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Wrench_1.14.0.tar.gz
Windows Binary	Wrench_1.14.0.zip
macOS Binary (x86_64)	Wrench_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Wrench
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Wrench
Package Short Url	https://bioconductor.org/packages/Wrench/
Package Downloads Report	Download Stats