TransView

DOI: 10.18129/B9.bioc.TransView    

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

Bioconductor version: Release (3.15)

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Author: Julius Muller

Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TransView")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TransView")

 

PDF	R Script	An introduction to TransView
PDF		Reference Manual
Text		NEWS

Details

biocViews	ChIPSeq, Clustering, DNAMethylation, DataImport, GeneExpression, ImmunoOncology, MethylSeq, Microarray, MultipleComparison, RNASeq, Sequencing, Software, Transcription, Visualization
Version	1.40.0
In Bioconductor since	BioC 2.11 (R-2.15) (10 years)
License	GPL-3
Depends	methods, GenomicRanges
Imports	BiocGenerics, S4Vectors(>= 0.9.25), IRanges, zlibbioc, gplots
LinkingTo	Rhtslib(>= 1.15.3)
Suggests	RUnit, pasillaBamSubset, BiocManager
SystemRequirements	GNU make
Enhances
URL	http://bioconductor.org/packages/release/bioc/html/TransView.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TransView_1.40.0.tar.gz
Windows Binary	TransView_1.40.0.zip
macOS Binary (x86_64)	TransView_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TransView
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TransView
Package Short Url	https://bioconductor.org/packages/TransView/
Package Downloads Report	Download Stats