Sushi

DOI: 10.18129/B9.bioc.Sushi    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.15 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Sushi.

Tools for visualizing genomics data

Bioconductor version: Release (3.15)

Flexible, quantitative, and integrative genomic visualizations for publication-quality multi-panel figures

Author: Douglas H Phanstiel <dphansti at stanford.edu>

Maintainer: Douglas H Phanstiel <dphansti at stanford.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Sushi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Sushi")

 

PDF	R Script	Sushi
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataRepresentation, Genetics, HiC, Infrastructure, Sequencing, Software, Visualization
Version	1.34.0
In Bioconductor since	BioC 2.14 (R-3.1) (8.5 years)
License	GPL (>= 2)
Depends	R (>= 2.10), zoo, biomaRt
Imports	graphics, grDevices
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	diffloop
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Sushi_1.34.0.tar.gz
Windows Binary	Sushi_1.34.0.zip (64-bit only)
macOS Binary (x86_64)	Sushi_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Sushi
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Sushi
Package Short Url	https://bioconductor.org/packages/Sushi/
Package Downloads Report	Download Stats