This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.15 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ProteomicsAnnotationHubData .
Bioconductor version: Release (3.15)
These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures.
Author: Gatto Laurent [aut, cre], Sonali Arora [aut]
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
Citation (from within R,
enter citation("ProteomicsAnnotationHubData")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("ProteomicsAnnotationHubData")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | DataImport, Proteomics, Software |
Version | 1.26.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (7 years) |
License | Artistic-2.0 |
Depends | AnnotationHub(>= 2.1.45), AnnotationHubData |
Imports | mzR(>= 2.3.2), MSnbase, Biostrings, GenomeInfoDb, utils, Biobase, BiocManager, RCurl |
LinkingTo | |
Suggests | knitr, BiocStyle, rmarkdown, testthat |
SystemRequirements | |
Enhances | |
URL | https://github.com/lgatto/ProteomicsAnnotationHubData |
BugReports | https://github.com/lgatto/ProteomicsAnnotationHubData/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS Binary (x86_64) | |
Source Repository | git clone https://git.bioconductor.org/packages/ProteomicsAnnotationHubData |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ProteomicsAnnotationHubData |
Package Short Url | https://bioconductor.org/packages/ProteomicsAnnotationHubData/ |
Package Downloads Report | Download Stats |
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