MiRaGE

DOI: 10.18129/B9.bioc.MiRaGE    

MiRNA Ranking by Gene Expression

Bioconductor version: Release (3.15)

The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.

Author: Y-h. Taguchi <tag at granular.com>

Maintainer: Y-h. Taguchi <tag at granular.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MiRaGE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MiRaGE")

 

PDF	R Script	How to use MiRaGE Package
PDF		Reference Manual

Details

biocViews	GeneExpression, ImmunoOncology, Microarray, RNASeq, SAGE, Sequencing, Software
Version	1.38.0
In Bioconductor since	BioC 2.11 (R-2.15) (10 years)
License	GPL
Depends	R (>= 3.1.0), Biobase(>= 2.23.3)
Imports	BiocGenerics, S4Vectors, AnnotationDbi, BiocManager
LinkingTo
Suggests	seqinr (>= 3.0.7), biomaRt(>= 2.19.1), GenomicFeatures(>= 1.15.4), Biostrings(>= 2.31.3), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData
SystemRequirements
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MiRaGE_1.38.0.tar.gz
Windows Binary	MiRaGE_1.38.0.zip
macOS Binary (x86_64)	MiRaGE_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MiRaGE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MiRaGE
Package Short Url	https://bioconductor.org/packages/MiRaGE/
Package Downloads Report	Download Stats