GOSim

DOI: 10.18129/B9.bioc.GOSim    

Computation of functional similarities between GO terms and gene products; GO enrichment analysis

Bioconductor version: Release (3.15)

This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis

Author: Holger Froehlich <frohlich at bit.uni-bonn.de>

Maintainer: Holger Froehlich <frohlich at bit.uni-bonn.de>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GOSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOSim")

 

PDF	R Script	GOsim
PDF		Reference Manual

Details

biocViews	Clustering, GO, Pathways, Software
Version	1.34.0
In Bioconductor since	BioC 2.13 (R-3.0) (9 years)
License	GPL (>= 2)
Depends	GO.db, annotate
Imports	org.Hs.eg.db, AnnotationDbi, topGO, cluster, flexmix, RBGL, graph, Matrix, corpcor, Rcpp
LinkingTo	Rcpp
Suggests
SystemRequirements
Enhances	igraph
URL
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GOSim_1.34.0.tar.gz
Windows Binary	GOSim_1.34.0.zip
macOS Binary (x86_64)	GOSim_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GOSim
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GOSim
Package Short Url	https://bioconductor.org/packages/GOSim/
Package Downloads Report	Download Stats