SilacPeptideExperiment-constructor {pulsedSilac} | R Documentation |
Constructor function for the SilacPeptideExperiment class object.
SilacPeptideExperiment( assays, rowData = NULL, colData = NULL, conditionCol = NA, timeCol = NA, proteinCol = NA, metadata = NULL )
assays |
A named |
rowData |
A |
colData |
A |
conditionCol |
A |
timeCol |
A |
proteinCol |
A |
metadata |
A |
An object of class SilacPeptideExperiment
.
See SilacPeptideExperiment-class for details.
See SilacProteinPeptideExperiment-accessors for details.
## assays assays_peptide <- list(expression = matrix(1:15, ncol = 3)) ## colData colData <- data.frame(sample = c('A1', 'A2', 'A3'), condition = c('A', 'A', 'A'), time = c(1, 2, 3)) ## rowData rowData_peptide <- data.frame(pept_id = letters[1:5], prot_id = c('A', 'A', 'B', 'C', 'C')) ## construct the ProteinExperiment peptExp <- SilacPeptideExperiment(assays = assays_peptide, rowData = rowData_peptide, colData = colData, conditionCol = 'condition', timeCol = 'time')